ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5j44B1 - ECOD Domain | ECOD

ECOD/Domains/e5j44B1

e5j44B1

UID: 002060706

PDB

Range: B:1-257
PDB: 5J44 chain B(all domains)
UniProt: Q8VSL2 (all domains)
Gene: sepA

Molecule: Serine protease SepA autotransporter (EC 3.4.21.-) [Cleaved into: Serine protease SepA; Serine protease SepA translocator]

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_S6 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase_S6(1.1.5.13)

Pfam Families

PF02395Peptidase_S6

Immunoglobulin A1 protease

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 5J44 RCSB PDB: 5J44 PDBe: 5J44 UniProt: Q8VSL2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure