ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5wq8E1 - ECOD Domain | ECOD

ECOD/Domains/e5wq8E1

e5wq8E1

UID: 002063170

PDB

Range: E:97-165
PDB: 5WQ8 chain E(all domains)
UniProt: P45779 (all domains)
Gene: epsD

Molecule: Secretin GspD (Cholera toxin secretion protein EpsD) (General secretion pathway protein D) (GspD) (Type II secretion system protein D) (T2SS protein D)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Secretin_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-lytic protease prodomain-like(327)

HH-groupRing-building motif II in type III secretion system(327.16)

TT-groupRing-building motif II in type III secretion system(327.16.1)

FFamilySecretin_N(327.16.1.3)

Pfam Families

PF03958Secretin_N

Bacterial type II/III secretion system short domain

External Links

ECOD PDB View: 5WQ8 RCSB PDB: 5WQ8 PDBe: 5WQ8 UniProt: P45779

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure