ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v8sA1 - ECOD Domain | ECOD

ECOD/Domains/e5v8sA1

e5v8sA1

UID: 002067537

PDB

Range: A:1-250
PDB: 5V8S chain A(all domains)
UniProt: Q9WZL4 (all domains)
Gene: TM_0755

Molecule: Flavoprotein

3D Structure

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Related Domains

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Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyODP(247.1.1.17)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, Mu-oxo-diiron)

AcetateACT
DrugBank DB14511within 5 Å only
Mu-oxo-diironFEO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

ODP family beta lactamase

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 5V8S RCSB PDB: 5V8S PDBe: 5V8S UniProt: Q9WZL4

Downloads

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