ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nljA1 - ECOD Domain | ECOD

ECOD/Domains/e5nljA1

e5nljA1

UID: 002067991

PDB

Range: A:1-71
PDB: 5NLJ chain A(all domains)
UniProt: P0CG47 (all domains)
Gene: UBB

Molecule: Polyubiquitin-B

3D Structure

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Related Domains

Browse other domains in ubiquitin →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyubiquitin(221.1.1.2)

Ligands

in contact, ≤ 4 Å

TrifluoroethanolETF
drugDrugBank DB03226within 5 Å only
Zinc ionZN
metal

+ 1 additive (Acetate)

Pfam Families

PF00240ubiquitin

Ubiquitin family

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 5NLJ RCSB PDB: 5NLJ PDBe: 5NLJ UniProt: P0CG47

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

AcetateACT

DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.