ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5tvfB1 - ECOD Domain | ECOD

ECOD/Domains/e5tvfB1

e5tvfB1

UID: 002069298

PDB

Range: B:86-209,B:232-356
PDB: 5TVF chain B(all domains)
UniProt: Q587A7 (all domains)
Gene: Tb06.26G9.820

Molecule: S-adenosylmethionine decarboxylase alpha chain

3D Structure

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Related Domains

Browse other domains in SAM_decarbox →

Classification

AArchitecturea+b two layers(a.11)

XX-groupTBP-like(331)

HH-groupS-adenosylmethionine decarboxylase-related(331.10)

TT-groupS-adenosylmethionine decarboxylase(331.10.1)

FFamilySAM_decarbox(331.10.1.1)

Ligands

in contact, ≤ 4 Å

2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-DiolB3P
drugDrugBank DB02676
PutrescinePUT
drug

Pfam Families

PF01536SAM_decarbox

Adenosylmethionine decarboxylase

External Links

ECOD PDB View: 5TVF RCSB PDB: 5TVF PDBe: 5TVF UniProt: Q587A7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01917

3-[C-[N'-(3-CARBAMIMIDOYL-BENZYLIDENIUM)-HYDRAZINO]-[[AMINOMETHYLIDENE]AMINIUM]-IMINOMETHYL]-BENZAMIDINIUMCGQ

Shown in the structure viewer. Drug annotations from DrugDomain.