ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5hkvJ1 - ECOD Domain | ECOD

ECOD/Domains/e5hkvJ1

e5hkvJ1

UID: 002070969

PDB

Range: J:2-138
PDB: 5HKV chain J(all domains)
UniProt: Q2FW13 (all domains)
Gene: rplP

Molecule: 50S ribosomal protein L16

3D Structure

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Related Domains

Browse other domains in Ribosomal_L16 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325)

HH-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325.1)

TT-groupRibosomal protein L10e(325.1.5)

FFamilyRibosomal_L16(325.1.5.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
MANGANESE (II) IONMN
metal

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-Diol

Pfam Families

PF00252Ribosomal_L16

Ribosomal protein L16p/L10e

ClanCL0021OB

External Links

ECOD PDB View: 5HKV RCSB PDB: 5HKV PDBe: 5HKV UniProt: Q2FW13

Downloads

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DrugBank DB03564within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.