ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5m65A2 - ECOD Domain | ECOD

ECOD/Domains/e5m65A2

e5m65A2

UID: 002073800

PDB

Range: A:5-231,A:392-473
PDB: 5M65 chain A(all domains)
UniProt: A0A087WNH6 (all domains)
Gene: ahcY

Molecule: Adenosylhomocysteinase

3D Structure

Loading viewer...

Related Domains

Browse other domains in AdoHcyase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFormate/glycerate dehydrogenase catalytic domain-like(2003.1.11)

FFamilyAdoHcyase(2003.1.11.3)

Ligands

in contact, ≤ 4 Å

AdenineADE
drugDrugBank DB00173
NadideNAD
drugDrugBank DB14128
Sodium ion

Pfam Families

PF05221AdoHcyase

S-adenosyl-L-homocysteine hydrolase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5M65 RCSB PDB: 5M65 PDBe: 5M65 UniProt: A0A087WNH6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.