ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5nkkE2 - ECOD Domain | ECOD

ECOD/Domains/e5nkkE2

e5nkkE2

UID: 002074968

PDB

Range: E:333-356,E:382-421
PDB: 5NKK chain E(all domains)
UniProt: O62301 (all domains)
Gene: smg-8

Molecule: Nonsense-mediated mRNA decay factor SMG8 (Suppressor with morphogenetic effect on genitalia protein 8)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Smg8_Smg9 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupInterferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain(621)

HH-groupInterferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain(621.1)

TT-groupInterferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain(621.1.1)

FFamilySmg8_Smg9(621.1.1.2)

Pfam Families

PF10220Smg8_Smg9

Smg8_Smg9

External Links

ECOD PDB View: 5NKK RCSB PDB: 5NKK PDBe: 5NKK UniProt: O62301

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure