ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ldbC1 - ECOD Domain | ECOD

ECOD/Domains/e5ldbC1

e5ldbC1

UID: 002087095

PDB

Range: C:1-267
PDB: 5LDB chain C(all domains)
UniProt: A0A0S7ASE9 (all domains)

Molecule: Polyphosphate:AMP phosphotransferase

3D Structure

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Related Domains

Browse other domains in PPK2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyPPK2(2004.1.1.109)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

Polyphosphate kinase 2 (PPK2)

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5LDB RCSB PDB: 5LDB PDBe: 5LDB UniProt: A0A0S7ASE9

Downloads

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Drug annotations from DrugDomain.