ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5vyqB2 - ECOD Domain | ECOD

ECOD/Domains/e5vyqB2

e5vyqB2

UID: 002093310

PDB

Range: B:176-231
PDB: 5VYQ chain B(all domains)
UniProt: R4MIX2 (all domains)
Gene: J113_23825

Molecule: Uncharacterized protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in N_formyltrans_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupFMT C-terminal domain-like(270)

HH-groupFMT C-terminal domain-related(270.1)

TT-groupFMT C-terminal domain-related(270.1.1)

FFamilyN_formyltrans_C(270.1.1.3)

Ligands

in contact, ≤ 4 Å

Thymidine-5'- DiphosphateTYD
drugDrugBank DB03103
Chloride ionCL
3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACIDEP1

Pfam Families

PF18216N_formyltrans_C

N-formyltransferase dimerization C-terminal domain

External Links

ECOD PDB View: 5VYQ RCSB PDB: 5VYQ PDBe: 5VYQ UniProt: R4MIX2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.