ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mrmA1 - ECOD Domain | ECOD

ECOD/Domains/e5mrmA1

e5mrmA1

UID: 002093618

PDB

Range: A:75-299
PDB: 5MRM chain A(all domains)
UniProt: P69834 (all domains)
Gene: ISPD

Molecule: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic

3D Structure

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Related Domains

Browse other domains in IspD →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleotide-diphospho-sugar transferases(7516)

HH-groupNucleotide-diphospho-sugar transferases(7516.1)

TT-groupNucleotide-diphospho-sugar transferases(7516.1.1)

FFamilyIspD(7516.1.1.5)

Ligands

in contact, ≤ 4 Å

Cadmium ionCD
metal
Potassium ionK
metal
2,4-bis(bromanyl)-6-[3-(trifluoromethyl)-1,2-oxazol-5-yl]phenolQ9T

Pfam Families

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

ClanCL0110GT-A

External Links

ECOD PDB View: 5MRM RCSB PDB: 5MRM PDBe: 5MRM UniProt: P69834

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Acetate, Tromethamine)

AcetateACT
DrugBank DB14511
TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.