ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vs1A1 - ECOD Domain | ECOD

ECOD/Domains/e5vs1A1

e5vs1A1

UID: 002094033

PDB

Range: A:10-91
PDB: 5VS1 chain A(all domains)
UniProt: P06746 (all domains)
Gene: POLB

Molecule: DNA polymerase beta

3D Structure

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Related Domains

Browse other domains in HHH_8 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyHHH_8(102.1.1.30)

Ligands

in contact, ≤ 4 Å

Thymidine 5'-triphosphateTTP
drugDrugBank DB02452within 5 Å only
Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from .

Pfam Families

Helix-hairpin-helix domain

ClanCL0198HHH

External Links

ECOD PDB View: 5VS1 RCSB PDB: 5VS1 PDBe: 5VS1 UniProt: P06746

Downloads

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