ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vpwC3 - ECOD Domain | ECOD

ECOD/Domains/e5vpwC3

e5vpwC3

UID: 002095982

PDB

Range: C:322-371,C:394-520
PDB: 5VPW chain C(all domains)
UniProt: P00467 (all domains)
Gene: nifD

Molecule: Nitrogenase molybdenum-iron protein alpha chain

3D Structure

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Related Domains

Browse other domains in Oxidored_nitro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupChelatase-like(2007.1.14)

FFamilyOxidored_nitro(2007.1.14.1)

Ligands

in contact, ≤ 4 Å

3-HYDROXY-3-CARBOXY-ADIPIC ACIDHCA
iron-sulfur-molybdenum cluster with interstitial carbonICS

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00148Oxidored_nitro

Nitrogenase component 1 type Oxidoreductase

ClanCL0043Chelatase

External Links

ECOD PDB View: 5VPW RCSB PDB: 5VPW PDBe: 5VPW UniProt: P00467

Downloads

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