ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5vvjC1 - ECOD Domain | ECOD

ECOD/Domains/e5vvjC1

e5vvjC1

UID: 002098114

PDB

Range: C:16-277
PDB: 5VVJ chain C(all domains)
UniProt: Q46896 (all domains)
Gene: ygbT

Molecule: CRISPR-associated endonuclease Cas1 (EC 3.1.-.-)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Cas_Cas1 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupCas1(3239)

HH-groupCas1(3239.1)

TT-groupCas1(3239.1.1)

FFamilyCas_Cas1(3239.1.1.1)

Pfam Families

PF01867Cas_Cas1

CRISPR associated protein Cas1

External Links

ECOD PDB View: 5VVJ RCSB PDB: 5VVJ PDBe: 5VVJ UniProt: Q46896

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure