ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vypM1 - ECOD Domain | ECOD

ECOD/Domains/e5vypM1

e5vypM1

UID: 002098145

PDB

Range: M:1-47
PDB: 5VYP chain M(all domains)
UniProt: C0HK49 (all domains)

Molecule: Defensin NsD7

3D Structure

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Related Domains

Browse other domains in Gamma-thionin →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupomega toxin-like(387)

HH-groupomega toxin-related(387.1)

TT-groupScorpion toxin-like(387.1.5)

FFamilyGamma-thionin(387.1.5.1)

Ligands

in contact, ≤ 4 Å

[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoatePIO

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF00304Gamma-thionin

Gamma-thionin family

ClanCL0054Knottin_1

External Links

ECOD PDB View: 5VYP RCSB PDB: 5VYP PDBe: 5VYP UniProt: C0HK49

Downloads

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Drug annotations from DrugDomain.