ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5tdmB1 - ECOD Domain | ECOD

ECOD/Domains/e5tdmB1

e5tdmB1

UID: 002099695

PDB

Range: B:624-810
PDB: 5TDM chain B(all domains)
UniProt: P53396 (all domains)
Gene: ACLY

Molecule: ATP-citrate synthase

3D Structure

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Related Domains

Browse other domains in Ligase_CoA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupSuccinyl-CoA synthetase domains(2007.3)

TT-groupSuccinyl-CoA synthetase domains(2007.3.1)

FFamilyLigase_CoA(2007.3.1.1)

Ligands

in contact, ≤ 4 Å

3-C-carboxy-2-deoxy-L-threo-pentaric acid7A2
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00549Ligase_CoA

CoA-ligase

ClanCL0506Succ_CoA_synth

External Links

ECOD PDB View: 5TDM RCSB PDB: 5TDM PDBe: 5TDM UniProt: P53396

Downloads

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