ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vqbC2 - ECOD Domain | ECOD

ECOD/Domains/e5vqbC2

e5vqbC2

UID: 002101445

PDB

Range: C:1-165,C:264-380
PDB: 5VQB chain C(all domains)
UniProt: F2R776 (all domains)
Gene: rox

Molecule: Rifampin monooxygenase

3D Structure

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Related Domains

Browse other domains in FAD_binding_3,NAD_binding_8 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyFAD_binding_3,NAD_binding_8(2003.1.2.16)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01494FAD_binding_3

FAD binding domain

ClanCL0063NADP_Rossmann

PF13450NAD_binding_8

NAD(P)-binding Rossmann-like domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5VQB RCSB PDB: 5VQB PDBe: 5VQB UniProt: F2R776

Downloads

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