ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y34A3 - ECOD Domain | ECOD

ECOD/Domains/e5y34A3

e5y34A3

UID: 002102020

PDB

Range: A:97-335,A:406-502
PDB: 5Y34 chain A(all domains)
UniProt: F2Z6J6 (all domains)
Gene: hoxG

Molecule: Hydrogenase

3D Structure

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Related Domains

Browse other domains in NiFeSe_Hases →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025)

HH-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025.1)

TT-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025.1.1)

FFamilyNiFeSe_Hases(4025.1.1.2)

Ligands

in contact, ≤ 4 Å

FE3-S4 CLUSTERF3S
CARBONMONOXIDE-(DICYANO) IRONFCO
within 5 Å only
FE4-S3 CLUSTERSF3

Pfam Families

PF00374NiFeSe_Hases

Nickel-dependent hydrogenase

External Links

ECOD PDB View: 5Y34 RCSB PDB: 5Y34 PDBe: 5Y34 UniProt: F2Z6J6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

within 5 Å only

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.