ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5o4eA2 - ECOD Domain | ECOD

ECOD/Domains/e5o4eA2

e5o4eA2

UID: 002105435

PDB

Range: A:342-444
PDB: 5O4E chain A(all domains)
UniProt: P0DOX5 (all domains)

Molecule: Immunoglobulin gamma-1 heavy chain

3D Structure

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Related Domains

Browse other domains in C1-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyC1-set(11.1.1.96)

Ligands

in contact, ≤ 4 Å

(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Cacodylate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Cacodylate ionCAC

Pfam Families

Immunoglobulin C1-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 5O4E RCSB PDB: 5O4E PDBe: 5O4E UniProt: P0DOX5

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.