ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v2ci1 - ECOD Domain | ECOD

ECOD/Domains/e5v2ci1

e5v2ci1

UID: 002105706

PDB

Range: i:1-38
PDB: 5V2C chain i(all domains)
UniProt: P12240 (all domains)
Gene: psbI

Molecule: Photosystem II reaction center protein I

3D Structure

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Related Domains

Browse other domains in PsbI →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction center protein I, PsbI(5035)

HH-groupPhotosystem II reaction center protein I, PsbI(5035.1)

TT-groupPhotosystem II reaction center protein I, PsbI(5035.1.1)

FFamilyPsbI(5035.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

Pfam Families

Photosystem II reaction centre I protein (PSII 4.8 kDa protein)

External Links

ECOD PDB View: 5V2C RCSB PDB: 5V2C PDBe: 5V2C UniProt: P12240

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

within 5 Å only

+ 5 additives (Triethylene glycol, 1,2-ETHANEDIOL, Dodecyl-beta-d-maltoside, …)

Triethylene glycolPGE
DrugBank DB02327
1,2-ETHANEDIOLEDO
Dodecyl-beta-d-maltosideLMT
Tetraethylene glycolPG4
3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOLPE8
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.