ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xteY1 - ECOD Domain | ECOD

ECOD/Domains/e5xteY1

e5xteY1

UID: 002105977

PDB

Range: Y:268-480
PDB: 5XTE chain Y(all domains)
UniProt: P31930 (all domains)
Gene: UQCRC1

Molecule: Cytochrome b-c1 complex subunit 1, mitochondrial

3D Structure

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Related Domains

Browse other domains in Peptidase_M16_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupLuxS, MPP, ThrRS/AlaRS common domain(309)

HH-groupLuxS, MPP, ThrRS/AlaRS common domain(309.1)

TT-groupLuxS/MPP-like metallohydrolase(309.1.1)

FFamilyPeptidase_M16_C(309.1.1.4)

Ligands

in contact, ≤ 4 Å

Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429
PhosphatidylethanolaminePEE
drugDrugBank DB04327

Pfam Families

PF05193Peptidase_M16_C

Peptidase M16 inactive domain

ClanCL0094Peptidase_ME

External Links

ECOD PDB View: 5XTE RCSB PDB: 5XTE PDBe: 5XTE UniProt: P31930

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL

Shown in the structure viewer. Drug annotations from DrugDomain.