ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5omoB2 - ECOD Domain | ECOD

ECOD/Domains/e5omoB2

e5omoB2

UID: 002114478

PDB

Range: B:293-476
PDB: 5OMO chain B(all domains)
UniProt: P07896 (all domains)
Gene: Ehhadh

Molecule: Peroxisomal bifunctional enzyme

3D Structure

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Related Domains

Browse other domains in 3HCDH_N, F420_oxidored →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamily3HCDH_N, F420_oxidored(2003.1.1.155)

Ligands

in contact, ≤ 4 Å

(S)-3-HYDROXYDECANOYL-COAHSC
within 5 Å only

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF027373HCDH_N

3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

ClanCL0063NADP_Rossmann

PF03807F420_oxidored

NADP oxidoreductase coenzyme F420-dependent

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5OMO RCSB PDB: 5OMO PDBe: 5OMO UniProt: P07896

Downloads

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