ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5wbrA1 - ECOD Domain | ECOD

ECOD/Domains/e5wbrA1

e5wbrA1

UID: 002117553

PDB

Range: A:5-298
PDB: 5WBR chain A(all domains)
UniProt: P50053 (all domains)
Gene: KHK

Molecule: Ketohexokinase

3D Structure

Loading viewer...

Related Domains

Browse other domains in PfkB →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRibokinase-like(2003.6)

TT-groupRibokinase-like(2003.6.1)

FFamilyPfkB(2003.6.1.1)

Ligands

in contact, ≤ 4 Å

6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-[(3S)-3-(hydroxymethyl)piperidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrileA3Y

+ 3 additives (Citric acid, Glycerin, Sulfate ion)

Citric acidCIT
DrugBank DB04272
Glycerin

Pfam Families

pfkB family carbohydrate kinase

ClanCL0118Ribokinase

External Links

ECOD PDB View: 5WBR RCSB PDB: 5WBR PDBe: 5WBR UniProt: P50053

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.