ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y4iA1 - ECOD Domain | ECOD

ECOD/Domains/e5y4iA1

e5y4iA1

UID: 002122126

PDB

Range: A:3-386
PDB: 5Y4I chain A(all domains)
UniProt: P24300 (all domains)
Gene: xylA

Molecule: Xylose isomerase

3D Structure

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Related Domains

Browse other domains in AP_endonuc_2 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyAP_endonuc_2(2002.1.1.60)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives (Acetate, Glycerin)

AcetateACT
DrugBank DB14511
Glycerin

Pfam Families

PF01261AP_endonuc_2

Xylose isomerase-like TIM barrel

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5Y4I RCSB PDB: 5Y4I PDBe: 5Y4I UniProt: P24300

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.