ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3bmbB1 - ECOD Domain | ECOD

ECOD/Domains/e3bmbB1

e3bmbB1

UID: 002126108

PDB

Range: B:46-136
PDB: 3BMB chain B(all domains)
UniProt: P0AFW4 (all domains)
Gene: rnk

Molecule: Regulator of nucleoside diphosphate kinase

3D Structure

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Related Domains

Browse other domains in GreA_GreB →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFKBP-like(284)

HH-groupFKBP-like(284.1)

TT-groupFKBP-like(284.1.1)

FFamilyGreA_GreB(284.1.1.4)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
within 5 Å only

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01272GreA_GreB

Transcription elongation factor, GreA/GreB, C-term

ClanCL0487FKBP

External Links

ECOD PDB View: 3BMB RCSB PDB: 3BMB PDBe: 3BMB UniProt: P0AFW4

Downloads

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