ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ejkE2 - ECOD Domain | ECOD

ECOD/Domains/e5ejkE2

e5ejkE2

UID: 002127988

PDB

Range: E:45-215
PDB: 5EJK chain E(all domains)
UniProt: P03354 (all domains)
Gene: gag-pol

Molecule: Gag-Pro-Pol polyprotein

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 5EJK RCSB PDB: 5EJK PDBe: 5EJK UniProt: P03354

Downloads

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