ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5o0qB1 - ECOD Domain | ECOD

ECOD/Domains/e5o0qB1

e5o0qB1

UID: 002129311

PDB

Range: B:26-310,B:332-336
PDB: 5O0Q chain B(all domains)
UniProt: Q99PI8 (all domains)
Gene: Rtn4r

Molecule: Reticulon-4 receptor

3D Structure

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Related Domains

Browse other domains in LRR_1, LRR_5, LRR_8 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupLeucine-rich repeats(207.1)

TT-groupLeucine-rich repeats(207.1.1)

FFamilyLRR_1, LRR_5, LRR_8(207.1.1.130)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

Leucine Rich Repeat

ClanCL0022LRR

BspA type Leucine rich repeat region (6 copies)

ClanCL0022LRR

Leucine rich repeat

ClanCL0022LRR

External Links

ECOD PDB View: 5O0Q RCSB PDB: 5O0Q PDBe: 5O0Q UniProt: Q99PI8

Downloads

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Drug annotations from DrugDomain.