ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5okbC1 - ECOD Domain | ECOD

ECOD/Domains/e5okbC1

e5okbC1

UID: 002129341

PDB

Range: C:5-478
PDB: 5OKB chain C(all domains)
UniProt: W8QF82 (all domains)
Gene: gan1D

Molecule: Putative 6-phospho-beta-galactobiosidase

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_1 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_1(2002.1.1.12)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Imidazole, Phosphate ion)

ImidazoleIMD
DrugBank DB03366
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00232Glyco_hydro_1

Glycosyl hydrolase family 1

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5OKB RCSB PDB: 5OKB PDBe: 5OKB UniProt: W8QF82

Downloads

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