ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v2mA1 - ECOD Domain | ECOD

ECOD/Domains/e5v2mA1

e5v2mA1

UID: 002129503

PDB

Range: A:168-326
PDB: 5V2M chain A(all domains)
UniProt: Q837E0 (all domains)
Gene: mvaD

Molecule: Mevalonate diphosphate decarboxylase

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupGHMP Kinase, C-terminal domain(304.1)

TT-groupGHMP Kinase, C-terminal domain(304.1.1)

FFamilyMDD_C(304.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Mevalonate 5-diphosphate decarboxylase C-terminal domain

ClanCL0677GHMP_C

External Links

ECOD PDB View: 5V2M RCSB PDB: 5V2M PDBe: 5V2M UniProt: Q837E0

Downloads

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