ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5xj2A1 - ECOD Domain | ECOD

ECOD/Domains/e5xj2A1

e5xj2A1

UID: 002130767

PDB

Range: A:70-454
PDB: 5XJ2 chain A(all domains)
UniProt: Q97R12 (all domains)
Gene: SP_1029

Molecule: Uncharacterized RNA methyltransferase SP_1029 (EC 2.1.1.-)

3D Structure

Loading viewer...

Related Domains

Browse other domains in TRM5-TYW2_MTfase, tRNA_U5-meth_tr →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyTRM5-TYW2_MTfase, tRNA_U5-meth_tr(2003.1.5.196)

Pfam Families

PF02475TRM5-TYW2_MTfase

TRM5/TYW2 methyltransferase domain

ClanCL0063NADP_Rossmann

PF05958tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5XJ2 RCSB PDB: 5XJ2 PDBe: 5XJ2 UniProt: Q97R12

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure