ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5y9fE1 - ECOD Domain | ECOD

ECOD/Domains/e5y9fE1

e5y9fE1

UID: 002133300

PDB

Range: E:20-411,E:439-473
PDB: 5Y9F chain E(all domains)
UniProt: Q81971 (all domains)
Gene: ORF

Molecule: Major capsid protein L1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Late_protein_L1 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyLate_protein_L1(10.2.1.4)

Pfam Families

PF00500Late_protein_L1

L1 (late) protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 5Y9F RCSB PDB: 5Y9F PDBe: 5Y9F UniProt: Q81971

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure