ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vkiB1 - ECOD Domain | ECOD

ECOD/Domains/e5vkiB1

e5vkiB1

UID: 002136657

PDB

Range: B:64-223
PDB: 5VKI chain B(all domains)
UniProt: A7YCM0 (all domains)
Gene: VP4

Molecule: Outer capsid protein VP4

3D Structure

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Related Domains

Browse other domains in VP4_haemagglut →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyVP4_haemagglut(10.1.1.6)

Ligands

in contact, ≤ 4 Å

ThreonineTHR
drugDrugBank DB00156within 5 Å only

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF00426VP4_haemagglut

Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 5VKI RCSB PDB: 5VKI PDBe: 5VKI UniProt: A7YCM0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.