ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5x09A1 - ECOD Domain | ECOD

ECOD/Domains/e5x09A1

e5x09A1

UID: 002139052

PDB

Range: A:51-445
PDB: 5X09 chain A(all domains)
UniProt: O57728 (all domains)
Gene: atpA

Molecule: V-type ATP synthase alpha chain,V-type ATP synthase alpha chain

3D Structure

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Related Domains

Browse other domains in ATP-synt_ab,ATP-synt_ab_Xtn →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyATP-synt_ab,ATP-synt_ab_Xtn(2004.1.1.12)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Acetic acid, (4r)-2-Methylpentane-2,4-Diol, Tromethamine)

Acetic acidACY
DrugBank DB03166
(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Tromethamine

Pfam Families

PF00006ATP-synt_ab

ATP synthase alpha/beta family, nucleotide-binding domain

ClanCL0023P-loop_NTPase

PF16886ATP-synt_ab_Xtn

ATPsynthase alpha/beta subunit barrel-sandwich domain

ClanCL0105Hybrid

External Links

ECOD PDB View: 5X09 RCSB PDB: 5X09 PDBe: 5X09 UniProt: O57728

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.