ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5yhbA1 - ECOD Domain | ECOD

ECOD/Domains/e5yhbA1

e5yhbA1

UID: 002139088

PDB

Range: A:11-67,A:103-248
PDB: 5YHB chain A(all domains)
UniProt: P11041 (all domains)

Molecule: Polyhedrin

3D Structure

Loading viewer...

Related Domains

Browse other domains in Cypo_polyhedrin →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupPolyhedrin(10.27)

TT-groupPolyhedrin(10.27.1)

FFamilyCypo_polyhedrin(10.27.1.1)

Ligands

in contact, ≤ 4 Å

Palladium ionPD
metal
Palladium(II) allyl complexPLL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05865Cypo_polyhedrin

Cypovirus polyhedrin protein

External Links

ECOD PDB View: 5YHB RCSB PDB: 5YHB PDBe: 5YHB UniProt: P11041

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure