ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5omfA4 - ECOD Domain | ECOD

ECOD/Domains/e5omfA4

e5omfA4

UID: 002141164

PDB

Range: A:610-756
PDB: 5OMF chain A(all domains)
UniProt: P77933 (all domains)
Gene: pol

Molecule: DNA polymerase (EC 2.7.7.7) [Cleaved into: Homing endonuclease PI-PkoI (EC 3.1.-.-) (IVS-A) (Pko pol-1 intein); Homing endonuclease PI-PkoII (EC 3.1.-.-) (IVS-B) (Pko pol-2 intein)]

3D Structure

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Related Domains

Browse other domains in DNA_pol_B →

Classification

AArchitecturealpha bundles(a.7)

XX-group"thumb" domain in bacteriophage RB69-like DNA polymerase I(4969)

HH-group"thumb" domain in bacteriophage RB69-like DNA polymerase I(4969.1)

TT-group"thumb" domain in bacteriophage RB69-like DNA polymerase I(4969.1.1)

FFamilyDNA_pol_B(4969.1.1.1)

Pfam Families

PF00136DNA_pol_B

DNA polymerase family B

ClanCL0194DNA_pol_B-like

External Links

ECOD PDB View: 5OMF RCSB PDB: 5OMF PDBe: 5OMF UniProt: P77933

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