ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xafD1 - ECOD Domain | ECOD

ECOD/Domains/e5xafD1

e5xafD1

UID: 002141252

PDB

Range: D:246-441
PDB: 5XAF chain D(all domains)
UniProt: Q6B856 (all domains)
Gene: TUBB2B

Molecule: Tubulin beta-2B chain

3D Structure

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Related Domains

Browse other domains in Tubulin_C →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupTubulin C-terminal domain-like(301.6)

TT-groupTubulin C-terminal domain-like(301.6.1)

FFamilyTubulin_C(301.6.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137within 5 Å only
(3S,4R)-4-(3-hydroxy-4-methoxyphenyl)-3-methyl-1-(3,4,5-trimethoxyphenyl)azetidin-2-one84F

+ 2 additives (Glycerin, Imidazole)

Pfam Families

PF03953Tubulin_C

Tubulin C-terminal domain

ClanCL0442Tubulin_C

External Links

ECOD PDB View: 5XAF RCSB PDB: 5XAF PDBe: 5XAF UniProt: Q6B856

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

ImidazoleIMD

DrugBank DB03366within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.