ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5tjzA1 - ECOD Domain | ECOD

ECOD/Domains/e5tjzA1

e5tjzA1

UID: 002141747

PDB

Range: A:106-214
PDB: 5TJZ chain A(all domains)
UniProt: P9WP23 (all domains)
Gene: dapB

Molecule: 4-hydroxy-tetrahydrodipicolinate reductase

3D Structure

Loading viewer...

Related Domains

Browse other domains in DapB_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFwdE/GAPDH domain-like(298)

HH-groupGlyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain(298.1)

TT-groupGlyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain(298.1.1)

FFamilyDapB_C(298.1.1.9)

Ligands

in contact, ≤ 4 Å

Nicotinamide adenine dinucleotide phosphateNAP
drugDrugBank DB03461
Dipicolinic acidPDC
drugDrugBank DB04267

Pfam Families

Dihydrodipicolinate reductase, C-terminus

ClanCL0139GADPH_aa-bio_dh

External Links

ECOD PDB View: 5TJZ RCSB PDB: 5TJZ PDBe: 5TJZ UniProt: P9WP23

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-(2-ETHOXYETHOXY)ETHANOLAE3

Chloride ionCL

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.