ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5ugvA1 - ECOD Domain | ECOD

ECOD/Domains/e5ugvA1

e5ugvA1

UID: 002141991

PDB

Range: A:106-214
PDB: 5UGV chain A(all domains)
UniProt: P9WP23 (all domains)
Gene: dapB

Molecule: 4-hydroxy-tetrahydrodipicolinate reductase

3D Structure

Loading viewer...

Related Domains

Browse other domains in DapB_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFwdE/GAPDH domain-like(298)

HH-groupGlyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain(298.1)

TT-groupGlyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain(298.1.1)

FFamilyDapB_C(298.1.1.9)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Triethylene glycol, Sulfate ion)

Triethylene glycolPGE
DrugBank DB02327
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Dihydrodipicolinate reductase, C-terminus

ClanCL0139GADPH_aa-bio_dh

External Links

ECOD PDB View: 5UGV RCSB PDB: 5UGV PDBe: 5UGV UniProt: P9WP23

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure