ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6exnT1 - ECOD Domain | ECOD

ECOD/Domains/e6exnT1

e6exnT1

UID: 002142233

PDB

Range: T:21-163,T:196-349,T:375-790,T:793-807
PDB: 6EXN chain T(all domains)
UniProt: Q04048 (all domains)
Gene: SYF1

Molecule: Pre-mRNA-splicing factor SYF1 (PRP19-associated complex protein 90) (Synthetic lethal with CDC40 protein 1)

3D Structure

Loading viewer...

Related Domains

Browse other domains in HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyHAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N(109.4.1.1563)

Pfam Families

PF23220HAT_Syf1_M

Pre-mRNA-splicing factor SYF1 middle HAT repeat

ClanCL0020TPR

PF23231HAT_Syf1_CNRKL1_C

Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

ClanCL0020TPR

PF23233HAT_Syf1_CNRKL1_N

Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat

ClanCL0020TPR

External Links

ECOD PDB View: 6EXN RCSB PDB: 6EXN PDBe: 6EXN UniProt: Q04048

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure