ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2bh2B2 - ECOD Domain | ECOD

ECOD/Domains/e2bh2B2

e2bh2B2

UID: 002144907

PDB

Range: B:75-125,B:246-431
PDB: 2BH2 chain B(all domains)
UniProt: P55135 (all domains)
Gene: rlmD

Molecule: 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD (EC 2.1.1.190) (23S rRNA(m5U1939)-methyltransferase)

3D Structure

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Related Domains

Browse other domains in tRNA_U5-meth_tr →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilytRNA_U5-meth_tr(2003.1.5.53)

Pfam Families

PF05958tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2BH2 RCSB PDB: 2BH2 PDBe: 2BH2 UniProt: P55135

Downloads

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