ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oxjA1 - ECOD Domain | ECOD

ECOD/Domains/e5oxjA1

e5oxjA1

UID: 002148171

PDB

Range: A:601-630,A:755-832
PDB: 5OXJ chain A(all domains)
UniProt: P19821 (all domains)
Gene: polA

Molecule: DNA polymerase I, thermostable

3D Structure

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Related Domains

Browse other domains in DNA_pol_A →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyDNA_pol_A(304.48.1.6)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal
[(2~{R},3~{S},5~{R})-3-oxidanyl-5-(2-oxidanylidene-3~{H}-benzimidazol-1-yl)oxolan-2-yl]methyl [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphateNZI

+ 1 additive (Acetate ion)

Pfam Families

PF00476DNA_pol_A

DNA polymerase family A

External Links

ECOD PDB View: 5OXJ RCSB PDB: 5OXJ PDBe: 5OXJ UniProt: P19821

Downloads

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Acetate ion

Shown in the structure viewer. Drug annotations from DrugDomain.