ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6f41E1 - ECOD Domain | ECOD

ECOD/Domains/e6f41E1

e6f41E1

UID: 002151081

PDB

Range: E:2-143
PDB: 6F41 chain E(all domains)
UniProt: P20434 (all domains)
Gene: RPB5

Molecule: DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA polymerases I, II, and III subunit ABC1) (ABC27) (DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide)

3D Structure

Loading viewer...

Related Domains

Browse other domains in RNA_pol_Rpb5_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupEukaryotic RPB5 N-terminal domain(2008.3)

TT-groupEukaryotic RPB5 N-terminal domain(2008.3.1)

FFamilyRNA_pol_Rpb5_N(2008.3.1.1)

Pfam Families

PF03871RNA_pol_Rpb5_N

RNA polymerase Rpb5, N-terminal domain

ClanCL0236PDDEXK

External Links

ECOD PDB View: 6F41 RCSB PDB: 6F41 PDBe: 6F41 UniProt: P20434

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure