ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5on0B2 - ECOD Domain | ECOD

ECOD/Domains/e5on0B2

e5on0B2

UID: 002153004

PDB

Range: B:3-19,B:141-245,B:471-500
PDB: 5ON0 chain B(all domains)
UniProt: P33590 (all domains)
Gene: nikA

Molecule: Nickel-binding periplasmic protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

2-[2-[2-hydroxy-2-oxoethyl-[(3-methoxy-2-oxidanyl-phenyl)methyl]amino]ethyl-[(2-methylsulfanylphenyl)methyl]amino]ethanoic acid9YH
Chloride ionCL

+ 2 additives (Acetate ion, Glycerol)

Acetate ionACT

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 5ON0 RCSB PDB: 5ON0 PDBe: 5ON0 UniProt: P33590

Downloads

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GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.