ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5orgB2 - ECOD Domain | ECOD

ECOD/Domains/e5orgB2

e5orgB2

UID: 002153150

PDB

Range: B:23-108,B:233-275
PDB: 5ORG chain B(all domains)
UniProt: P0A4F8 (all domains)
Gene: occT

Molecule: Octopine-binding periplasmic protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_3(7523.1.1.4)

Ligands

in contact, ≤ 4 Å

octopine6DB
Chloride ionCL

+ 3 additives (Acetate, Glycerin, 1,2-ETHANEDIOL)

AcetateACT

Pfam Families

PF00497SBP_bac_3

Bacterial extracellular solute-binding proteins, family 3

ClanCL0177PBP

External Links

ECOD PDB View: 5ORG RCSB PDB: 5ORG PDBe: 5ORG UniProt: P0A4F8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

GlycerinGOL

DrugBank DB09462

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.