ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5w8jD1 - ECOD Domain | ECOD

ECOD/Domains/e5w8jD1

e5w8jD1

UID: 002153929

PDB

Range: D:158-331
PDB: 5W8J chain D(all domains)
UniProt: P00338 (all domains)
Gene: LDHA

Molecule: L-lactate dehydrogenase A chain

3D Structure

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Related Domains

Browse other domains in Ldh_1_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupLDH C-terminal domain-like(279)

HH-groupLDH C-terminal domain-like(279.1)

TT-groupLDH C-terminal domain-like(279.1.1)

FFamilyLdh_1_C(279.1.1.1)

Ligands

in contact, ≤ 4 Å

Malonic acidMLA
drugDrugBank DB02175
2-{3-(3,4-difluorophenyl)-5-hydroxy-4-[(4-sulfamoylphenyl)methyl]-1H-pyrazol-1-yl}-1,3-thiazole-4-carboxylic acid9Y7

+ 2 additives (Dimethyl sulfoxide, Glycerin)

Pfam Families

PF02866Ldh_1_C

lactate/malate dehydrogenase, alpha/beta C-terminal domain

ClanCL0341LDH_C

External Links

ECOD PDB View: 5W8J RCSB PDB: 5W8J PDBe: 5W8J UniProt: P00338

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Dimethyl sulfoxideDMS

DrugBank DB01093

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.