ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6bjdB1 - ECOD Domain | ECOD

ECOD/Domains/e6bjdB1

e6bjdB1

UID: 002160531

PDB

Range: B:58-268,B:324-417
PDB: 6BJD chain B(all domains)
UniProt: P20807 (all domains)
Gene: CAPN3

Molecule: Calpain-3

3D Structure

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Related Domains

Browse other domains in Peptidase_C2 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C2(219.1.1.4)

Ligands

in contact, ≤ 4 Å

4-[[(2S)-2-[[(2S)-3-Carboxy-2-hydroxypropanoyl]amino]-4-methylpentanoyl]amino]butyl-(diaminomethylidene)azaniumE64
drugDrugBank DB04276
SorbitolSOR
drug

Pfam Families

PF00648Peptidase_C2

Calpain family cysteine protease

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 6BJD RCSB PDB: 6BJD PDBe: 6BJD UniProt: P20807

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01638

Calcium ionCA

metal

Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.