ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6bk8A1 - ECOD Domain | ECOD

ECOD/Domains/e6bk8A1

e6bk8A1

UID: 002161595

PDB

Range: A:126-884
PDB: 6BK8 chain A(all domains)
UniProt: P33334 (all domains)
Gene: PRP8

Molecule: Pre-mRNA-splicing factor Prp8

3D Structure

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Related Domains

Browse other domains in PRO8NT,PROCN →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPre-mRNA-splicing factor 8 N-terminal domain(1038)

HH-groupPre-mRNA-splicing factor 8 N-terminal domain(1038.1)

TT-groupPre-mRNA-splicing factor 8 N-terminal domain(1038.1.1)

FFamilyPRO8NT,PROCN(1038.1.1.1)

Ligands

in contact, ≤ 4 Å

Phytic acidIHP
drugDrugBank DB14981
Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137within 5 Å only

Pfam Families

PRO8NT (NUC069), PrP8 N-terminal domain

PROCN (NUC071) domain

External Links

ECOD PDB View: 6BK8 RCSB PDB: 6BK8 PDBe: 6BK8 UniProt: P33334

Downloads

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Magnesium ionMG

metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.