ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mdkS2 - ECOD Domain | ECOD

ECOD/Domains/e5mdkS2

e5mdkS2

UID: 002162213

PDB

Range: S:5-182
PDB: 5MDK chain S(all domains)
UniProt: P31892 (all domains)
Gene: hoxK

Molecule: Uptake hydrogenase small subunit; HOXK

3D Structure

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Related Domains

Browse other domains in Oxidored_q6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupCheY-like(2007.1.3)

FFamilyOxidored_q6(2007.1.3.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
FE4-S3 CLUSTERF4S

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01058Oxidored_q6

NADH ubiquinone oxidoreductase, 20 Kd subunit

ClanCL0304CheY

External Links

ECOD PDB View: 5MDK RCSB PDB: 5MDK PDBe: 5MDK UniProt: P31892

Downloads

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