ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oy0M1 - ECOD Domain | ECOD

ECOD/Domains/e5oy0M1

e5oy0M1

UID: 002162351

PDB

Range: M:1-31
PDB: 5OY0 chain M(all domains)
UniProt: P72986 (all domains)
Gene: psaM

Molecule: Photosystem I reaction center subunit XII

3D Structure

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Related Domains

Browse other domains in PsaM →

Classification

AArchitectureextended segments(a.20)

XX-groupSubunit XII of photosystem I reaction centre, PsaM(5022)

HH-groupSubunit XII of photosystem I reaction centre, PsaM(5022.1)

TT-groupSubunit XII of photosystem I reaction centre, PsaM(5022.1.1)

FFamilyPsaM(5022.1.1.1)

Ligands

in contact, ≤ 4 Å

1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG
drugDrugBank DB02043
Chlorophyll aCLA
beta,beta-caroten-4-oneECH

Pfam Families

Photosystem I protein M (PsaM)

External Links

ECOD PDB View: 5OY0 RCSB PDB: 5OY0 PDBe: 5OY0 UniProt: P72986

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

+ 2 additives (Acetate, Dodecyl-beta-d-maltoside)

AcetateACT
DrugBank DB14511
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.