ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yqwA1 - ECOD Domain | ECOD

ECOD/Domains/e5yqwA1

e5yqwA1

UID: 002163000

PDB

Range: A:37-139
PDB: 5YQW chain A(all domains)
UniProt: D0XC84 (all domains)

Molecule: Peptide ABC transporter, periplasmic peptide-binding protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOligo-peptide binding protein (OPPA) insertion domain(304.136)

TT-groupOligo-peptide binding protein (OPPA) insertion domain(304.136.1)

FFamilySBP_bac_5(304.136.1.1)

Ligands

in contact, ≤ 4 Å

Diethylene glycol diethyl etherP4G
drugDrugBank DB08357

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 5YQW RCSB PDB: 5YQW PDBe: 5YQW UniProt: D0XC84

Downloads

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